PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN24529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 556aa MW: 61608.8 Da PI: 5.2258 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 299.4 | 9.2e-92 | 196 | 555 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 v+ L++ Ae++++++++ + +Larl+++ ++ +g+p+qR+a+yf+eAL++ l+ + + ++++++ +++++a+k+fs +sPi+ fs +taN PIN24529.1 196 VDELIRLAECFETHSFQIGHVILARLNQRlRAATGKPLQRAAFYFKEALQSLLTV-----STRPSHYPANTYEIVQTIKAQKTFSSISPIPMFSSFTAN 289 678*************************989999*******************98.....4444556666777************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 qa+lea++g+++vH+iDfdi+ G++W++++++La+++ + pp lRi ++++ e + e + + e+L++fA+el+++f+++++ +++e l+++++ PIN24529.1 290 QAVLEALDGSTHVHVIDFDIGLGGHWASFMKELADKAdlrkSAPPLLRISALVPDE--YAAESRLITENLTQFARELNIRFDIDFISIRTFEYLSFKSI 386 **********************************877776699***********55..99999************************************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsl.eaklpres..eerikvEre 288 ++ gE++aV l+ +++r + + +++ ++++sP+vvv+v+ e ++ +++s+ + +++ le+ys+l++sl +a++ + ++++++E PIN24529.1 387 KFMDGEKVAVLLSPAIFRHV---------GTGFVNDLRRISPHVVVHVDIEGQMefGTSSYRQAVIDGLEFYSTLLESLeAANFNGAGggDWMKSIETY 476 ******************98.........357******************955545***********************666665544789******** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l ++i + v + g++ Wre+l +aG+++v ls++a qa++llr+v+++g++v +++++++l+W+drpLv++SaWr PIN24529.1 477 VLYPKILETVEAVGRR-------GTPWREALVAAGLRQVGLSQFADFQAECLLRRVQVRGFNVVKRQAEMLLCWHDRPLVATSAWR 555 **************98.......789***********************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence |
MKVPFPGNNQ NNTKPVLNCN ITTALVTTLP ATTVPTATTA ATTTPSSSPY EPKSVLELRG 60 SPSPVAEKPS SNNNTSDILA DPLQLEDHVL TNPPLYDWDS LMREFGLQDD STAASKPFPQ 120 IISQSEIQIT QSEYSNLPEL APVDSAQFLP ADFGLLSEIP IYSTAPLNHN SNSINAFEGL 180 PGDLNTGNWN VGFDYVDELI RLAECFETHS FQIGHVILAR LNQRLRAATG KPLQRAAFYF 240 KEALQSLLTV STRPSHYPAN TYEIVQTIKA QKTFSSISPI PMFSSFTANQ AVLEALDGST 300 HVHVIDFDIG LGGHWASFMK ELADKADLRK SAPPLLRISA LVPDEYAAES RLITENLTQF 360 ARELNIRFDI DFISIRTFEY LSFKSIKFMD GEKVAVLLSP AIFRHVGTGF VNDLRRISPH 420 VVVHVDIEGQ MEFGTSSYRQ AVIDGLEFYS TLLESLEAAN FNGAGGGDWM KSIETYVLYP 480 KILETVEAVG RRGTPWREAL VAAGLRQVGL SQFADFQAEC LLRRVQVRGF NVVKRQAEML 540 LCWHDRPLVA TSAWRY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-128 | GRAS family protein |