PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN20819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 27264.2 Da PI: 6.0575 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.3e-21 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp++ kr++lg+++t+eeAa +++a+ +l+g PIN20819.1 105 KKFRGVRQRP-WGRWAAEIRDPTQ---GKRVWLGTYDTPEEAATVYDRAAVRLKG 155 59********.**********954...3***********************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MEQRKPIVKF TEHVVTTNKL IYPRRKSSSA ANIRRKVVRI VLTDADATDS SGDESDGAGF 60 YVHRVRRHVE EIKFRDLSAQ VAGQDGRHNK KKDWNRPVND VSGRKKFRGV RQRPWGRWAA 120 EIRDPTQGKR VWLGTYDTPE EAATVYDRAA VRLKGSAAVI NFPEVTPVTE SATESDAVSS 180 GNDVALSPTS VLGHEELTPF SGIGGDFGFD VDWPLSLPDI GMSGNYYGEE FGEFDFDDFI 240 NDLQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-39 | ERF family protein |