PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN16332.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

AP2

Protein Properties

Length: 379aa MW: 43085.1 Da PI: 9.2114

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN16332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.3	1.4e-11	66	122	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g PIN16332.1 66 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 122 789****************88887784446666.999*************98 PP
2	AP2	52.7	1.1e-16	165	216	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g PIN16332.1 165 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 216 89**************99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MAMAVIKSEE HLKKSQICMT DGEAPPARAV KRRRREATDS ILGNTQHLQQ QEKSPTSTPT 60 TVKRSSRFRG VSRHRWTGRY EAHLWDKLSW NVTQKKKGKQ GAYDDEEAAA RAYDLAALKY 120 WGTSTFTNFP ISDYEKEIEF MQTITKEEYL ASLRRKSSGF SRGMSKYRGV ARHHQNGRWE 180 ARIGRVFGNK YLYLGTYSTQ EEAARAYDIA AIEYRGINAI TNFDLSNYII WLKPESNDSV 240 LALETKPSIV YQEFQSSGLP TKAFHVNDFS MEGRYVRQNP FSSCKRSSSS TALDLLLSSS 300 VFRELVEKNS ILSEEDSDNE NTKNLQQASS NDEYGNAFYD IPFLLSSNSH GIQLKGQLHF 360 NYDSSNIMES GKIGVAPIC

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MAMAVIKSEE HLKKSQICMT DGEAPPARAV KRRRREATDS ILGNTQHLQQ QEKSPTSTPT  60
TVKRSSRFRG VSRHRWTGRY EAHLWDKLSW NVTQKKKGKQ GAYDDEEAAA RAYDLAALKY  120
WGTSTFTNFP ISDYEKEIEF MQTITKEEYL ASLRRKSSGF SRGMSKYRGV ARHHQNGRWE  180
ARIGRVFGNK YLYLGTYSTQ EEAARAYDIA AIEYRGINAI TNFDLSNYII WLKPESNDSV  240
LALETKPSIV YQEFQSSGLP TKAFHVNDFS MEGRYVRQNP FSSCKRSSSS TALDLLLSSS  300
VFRELVEKNS ILSEEDSDNE NTKNLQQASS NDEYGNAFYD IPFLLSSNSH GIQLKGQLHF  360
NYDSSNIMES GKIGVAPIC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-77	AP2 family protein