PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24255.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WOX

Protein Properties

Length: 396aa MW: 44564.4 Da PI: 7.2347

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.6	3.8e-22	79	138	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ PHU24255.1 79 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 138 7***************99************************************97 PP
2	Wus_type_Homeobox	115.4	2.8e-37	78	140	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ PHU24255.1 78 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 140 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MWMMGYNDGG DFNMPDSFNG RKLRPLMPRV PHPPNPTANP TNCLRSIHGD NFIALNHHQL 60 AMSEQNKRDF HTQQLVVSSR WNPTPEQLQT LEELYRRGTR TPSAEQIQHI TAQLRRYGKI 120 EGKNVFYWFQ NHKARERQKR RRQLESAANG AAAAGDDQSH SNCNAENTER KESGANRTVF 180 EIEQTKHWPS PTNCSTIPEK TAATTKAMAA AAAGGVAESC RAAAEKWIPF DEGEQRRSLL 240 AERNATWQMM HLSCSTPNNT NTIHLMNNNS TSTICSNIVT ATSNPITSSC PSTPRTMDHQ 300 PKQLFKPKDH LNIFIAPFRS ACDQKQHENI VNVIGGDDEE GHGESQTLEL FPLRSSSDNN 360 DENIFCDKDE IGAAANSNNN FNGSHYQFFE FLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MWMMGYNDGG DFNMPDSFNG RKLRPLMPRV PHPPNPTANP TNCLRSIHGD NFIALNHHQL  60
AMSEQNKRDF HTQQLVVSSR WNPTPEQLQT LEELYRRGTR TPSAEQIQHI TAQLRRYGKI  120
EGKNVFYWFQ NHKARERQKR RRQLESAANG AAAAGDDQSH SNCNAENTER KESGANRTVF  180
EIEQTKHWPS PTNCSTIPEK TAATTKAMAA AAAGGVAESC RAAAEKWIPF DEGEQRRSLL  240
AERNATWQMM HLSCSTPNNT NTIHLMNNNS TSTICSNIVT ATSNPITSSC PSTPRTMDHQ  300
PKQLFKPKDH LNIFIAPFRS ACDQKQHENI VNVIGGDDEE GHGESQTLEL FPLRSSSDNN  360
DENIFCDKDE IGAAANSNNN FNGSHYQFFE FLPLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	3e-53	WOX family protein