PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18645.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 357aa MW: 40057.3 Da PI: 7.0571

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18645.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H PHU18645.1 154 YECKTCNRTFSSFQALGGHRASH 176 99**********99999998887 PP
2	zf-C2H2	14.3	0.00012	250	272	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PHU18645.1 250 HTCSYCGAEFTSGQALGGHMRRH 272 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MEEAPREEVM GVSKGKRTKR VRPQSLIPFM TINAHSSYTG YGNNDGMVHE EISIVNNNNY 60 NNNNSSPPPA TSDENFPDEE VGPTEEEEET AKCLILLSQG GSQGGHHHHH QTPPIKFFDL 120 FNDDMGLYQP KFNSKKYVET TDLGNGAKAG TYVYECKTCN RTFSSFQALG GHRASHRKPK 180 PLTIEPKKQP FFYFSYQDDP SPTTTTTTPN YKHYNKLLSP TLSPLSTQFS NINMDSTPNY 240 NKSLSSPRIH TCSYCGAEFT SGQALGGHMR RHRGGANTNN TILCLSPLSI DQESTNYNLK 300 KPRNGLSLDL NFPAPQEYQN HPPKYLQEQA QKQQQQQDEQ ETALVLSTTP QLIGCHY

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MEEAPREEVM GVSKGKRTKR VRPQSLIPFM TINAHSSYTG YGNNDGMVHE EISIVNNNNY  60
NNNNSSPPPA TSDENFPDEE VGPTEEEEET AKCLILLSQG GSQGGHHHHH QTPPIKFFDL  120
FNDDMGLYQP KFNSKKYVET TDLGNGAKAG TYVYECKTCN RTFSSFQALG GHRASHRKPK  180
PLTIEPKKQP FFYFSYQDDP SPTTTTTTPN YKHYNKLLSP TLSPLSTQFS NINMDSTPNY  240
NKSLSSPRIH TCSYCGAEFT SGQALGGHMR RHRGGANTNN TILCLSPLSI DQESTNYNLK  300
KPRNGLSLDL NFPAPQEYQN HPPKYLQEQA QKQQQQQDEQ ETALVLSTTP QLIGCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	9e-43	C2H2 family protein