PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHU17502.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 154aa MW: 17662.6 Da PI: 4.2184 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.9 | 1.5e-24 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 r enk+nrqvtfskRr g+ KKA+ +SvLCdaeva+iif ++ kl+e+ss PHU17502.1 10 RTENKTNRQVTFSKRRGGLVKKAQQISVLCDAEVALIIFFHNAKLFEFSS 59 789*********************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 154 aa Download sequence |
MGRGKVELRR TENKTNRQVT FSKRRGGLVK KAQQISVLCD AEVALIIFFH NAKLFEFSSD 60 SWLWCNLLMQ KLLLQQRMPW MEEAFPASSN LVQAASYGGE VLLNCWKLKN LLNDERPSQE 120 DNQEDESDDD SDDVNESDSN LDNVDESDSD LDGW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26310.1 | 3e-29 | MIKC_MADS family protein |