PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU08478.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 938aa MW: 102368 Da PI: 6.396

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU08478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.9e-29	546	597	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PHU08478.1 546 AEKTISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 597 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence
MSKELTAPQQ PPYTAAMDLD FDSWSFDQIF AAAASPLMLP CSPLWTFSDD YDEKIAGNGV 60 STGLRRFVAY TGDPEATTET VAVNADKGRI PPPTSGLIPG NNPDGSCIIK ERMSQALRYL 120 KESTRERVLA QVWAPVKEAG RSVLTTSGQP FVLDPDCNGL HQYRTVSLMY MFAADGDTGG 180 VLGLPGRVFR LKLPEWTPNV QYYSSKEFPR LDHALHYNVR GTLALPVFEP SGQSCVGVLE 240 LIMTSQKINY AAEVDKVCKA LKAVNLKSSE ILDHPNTQIC NEGRQNALVE ILEILTAVCE 300 TYKLPLAQTW VPCRHRSVLA DGGGLKKSCS SFDGSCMGQI CMSTTDVSFY VVDAHMWGFR 360 EACAEHHLQK GQGVAGRAYA SQRSCFCEDI TQFCKTEYPL VHYARLFGLT SCFAICLRSS 420 LTGNDDYILE FFLPPDSRDY NDQQALFNSL LVTMKQHFRS LRIASGGELE HDWSSVEIIK 480 ASTEEKINTK PESVPVLRST HLDLLRVQQL AAGSVVANGA GEAPNGVSNV DNKVVGKKSE 540 KKRGKAEKTI SLEVLQQYFS GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS 600 LSKLKCVIES VQGAEGTFTL TSLAPNSLPA AVSSISWPNG ANGSNLPSSP SSKPSVFHEE 660 KNEFTAHGTP ESCEEAEPSN EMLGGRISRK EELSPPQNGF LHAEGSRKSR TGSVSKEESA 720 GTPTSHGSCQ GSPNAGNEFS PSNELVNSPA RELCMKVGGS LEASHQTTKE ISLGSLKEHN 780 QKLFRGMLVE DAGSSHDLRN LCSPGDALVD ERVQEYNLTN PPFSDATAKD PVYVHAAWPE 840 VTSVTIKATY KDDIIRFRLS LSSGIFKLKE EVAKRLKLEL GTFDIKYLDD DLELVSISCD 900 ADLQECVDIS RSSGSSIVRL LVLDIMSNLG SSCESSGK

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence

MSKELTAPQQ PPYTAAMDLD FDSWSFDQIF AAAASPLMLP CSPLWTFSDD YDEKIAGNGV  60
STGLRRFVAY TGDPEATTET VAVNADKGRI PPPTSGLIPG NNPDGSCIIK ERMSQALRYL  120
KESTRERVLA QVWAPVKEAG RSVLTTSGQP FVLDPDCNGL HQYRTVSLMY MFAADGDTGG  180
VLGLPGRVFR LKLPEWTPNV QYYSSKEFPR LDHALHYNVR GTLALPVFEP SGQSCVGVLE  240
LIMTSQKINY AAEVDKVCKA LKAVNLKSSE ILDHPNTQIC NEGRQNALVE ILEILTAVCE  300
TYKLPLAQTW VPCRHRSVLA DGGGLKKSCS SFDGSCMGQI CMSTTDVSFY VVDAHMWGFR  360
EACAEHHLQK GQGVAGRAYA SQRSCFCEDI TQFCKTEYPL VHYARLFGLT SCFAICLRSS  420
LTGNDDYILE FFLPPDSRDY NDQQALFNSL LVTMKQHFRS LRIASGGELE HDWSSVEIIK  480
ASTEEKINTK PESVPVLRST HLDLLRVQQL AAGSVVANGA GEAPNGVSNV DNKVVGKKSE  540
KKRGKAEKTI SLEVLQQYFS GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS  600
LSKLKCVIES VQGAEGTFTL TSLAPNSLPA AVSSISWPNG ANGSNLPSSP SSKPSVFHEE  660
KNEFTAHGTP ESCEEAEPSN EMLGGRISRK EELSPPQNGF LHAEGSRKSR TGSVSKEESA  720
GTPTSHGSCQ GSPNAGNEFS PSNELVNSPA RELCMKVGGS LEASHQTTKE ISLGSLKEHN  780
QKLFRGMLVE DAGSSHDLRN LCSPGDALVD ERVQEYNLTN PPFSDATAKD PVYVHAAWPE  840
VTSVTIKATY KDDIIRFRLS LSSGIFKLKE EVAKRLKLEL GTFDIKYLDD DLELVSISCD  900
ADLQECVDIS RSSGSSIVRL LVLDIMSNLG SSCESSGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein