PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU03825.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 315aa    MW: 35733.2 Da    PI: 8.4641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU03825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed +l+d ++++G+  +W + +++ g++R++k+c++rw++yl
       PHU03825.1 14 RGPWSPDEDAKLKDFIHKFGTAgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
2Myb_DNA-binding38.23.4e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
       PHU03825.1  69 GDFSDEEDRIICTLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      679******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGRAPCCDKA NVKRGPWSPD EDAKLKDFIH KFGTAGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRIIC TLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
IIPNNNNNNN FINIQKKSPH FLSTTTTTSF HQAQQNLGPL ITGLEQPIIS SAQQNILPNM  180
MIMTNNYNFP NFGATNYNLQ NYPKFEANCL QNYSQFGEVA SCSSSDGSHC SQMSFGNKEI  240
NNNIKREEIM RFGQTIFEGI NNQQFNLDYY GTMEQLATNC CTNGNNGSTS ISSNNLLLYN  300
DENCNKSNEI GMFYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-76MYB family protein