PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU03793.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 446aa MW: 48850.3 Da PI: 7.0016

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU03793.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	347	369	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H PHU03793.1 347 HECSICGSEFSSGQALGGHMRRH 369 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MREARLRWSC DEEEHGCPSA EVGPQSVQRG ACRLDDYLPQ FRFQSQYRTQ FSSTIPGLSE 60 TVTQLSSTAL VMNLMVFQPI FRIISVLLFS AHSSPDYSGS RVAGVIKVTA LPTEFSSYPG 120 SNLRPLIKVM EVCQNFNDRS CAFRGKRTKR SRPSSPLDKV GTMSITTTSS GGYSDDGGGS 180 EGEGDLCNST YSPTTSTTQI LIRGTSEEDE DMANCLILLA KSGSGQKVQA VTDELKKEKI 240 TSRKIAEITT TSTTGKADFY VYECKTCYRT FPSFQALGGH RASHKKPKTI VEDKKSATAT 300 DSTAASHDDQ QHHQESDDQE QGRLNKISHS LSNQTAVINN ISKTKIHECS ICGSEFSSGQ 360 ALGGHMRRHR PPTTTATTTA TATTKIISTN FETISNVSES SSSHHDEKST RNILSLDLNL 420 PAPPEDDHKY EQSIVFSAAP LVDCYY

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MREARLRWSC DEEEHGCPSA EVGPQSVQRG ACRLDDYLPQ FRFQSQYRTQ FSSTIPGLSE  60
TVTQLSSTAL VMNLMVFQPI FRIISVLLFS AHSSPDYSGS RVAGVIKVTA LPTEFSSYPG  120
SNLRPLIKVM EVCQNFNDRS CAFRGKRTKR SRPSSPLDKV GTMSITTTSS GGYSDDGGGS  180
EGEGDLCNST YSPTTSTTQI LIRGTSEEDE DMANCLILLA KSGSGQKVQA VTDELKKEKI  240
TSRKIAEITT TSTTGKADFY VYECKTCYRT FPSFQALGGH RASHKKPKTI VEDKKSATAT  300
DSTAASHDDQ QHHQESDDQE QGRLNKISHS LSNQTAVINN ISKTKIHECS ICGSEFSSGQ  360
ALGGHMRRHR PPTTTATTTA TATTKIISTN FETISNVSES SSSHHDEKST RNILSLDLNL  420
PAPPEDDHKY EQSIVFSAAP LVDCYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-44	C2H2 family protein