PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58185.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27962.6 Da    PI: 7.7399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.72.3e-11250149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie+k  r+v fsk +ng+ KKA+E S L++ +v  i+f + gk + y
  PHT58185.1  2 KLIESKEARTVAFSKIKNGLGKKAKEYSNLTGEDVGFILFTQAGKPHSY 50
                569*****************************************98887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MKLIESKEAR TVAFSKIKNG LGKKAKEYSN LTGEDVGFIL FTQAGKPHSY GSPSIEKVID  60
KFHELKQNDS LQNHTDMTKT NVFEEFEDLR KEVQAFKEKY LDSKMSIDKH TLENRLKKFE  120
AYKSRLDKIK KEIKDNIVPK RTETESSPSK GTSEETRVHP PLYELALQAL SQSGAEYDEY  180
GEKEYFKRDD ADANRPSIEE LVKAFSINRY PVRMQCDGAA DLTVDFVVKT INTVHQRTDL  240
RII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-15M-type_MADS family protein