PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT58167.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18108.6 Da    PI: 8.8239
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT58167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.64.4e-10250149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie+k  r+  fskR++ +  KA+E S L++a+v  i+f +  k + y
  PHT58167.1  2 KLIESKEARTAAFSKRKKNLGEKAKEYSNLTGADVGFILFTQAEKPHSY 50
                569*************************************999887776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MKLIESKEAR TAAFSKRKKN LGEKAKEYSN LTGADVGFIL FTQAEKPHSY GSPSIEKVID  60
KFHELKQNDS QQNHTNMSKT NAFEAFEDLR KEVQAFKEKD LDSAMPINKH MLEHKLKHFE  120
AYKSRLDKIK KEIKGDVPAE QFKFISEVVL DLEEMSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-14M-type_MADS family protein