PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT56547.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 548aa    MW: 60656.8 Da    PI: 5.9529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT56547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.92.4e-1011835472374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs++sPi+ fs +taN
  PHT56547.1 183 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPSSSSDVIQTIKSYKIFSNISPIPMFSSFTAN 275
                 678*************************999************************......778888999999************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+++ + +++e l+++++
  PHT56547.1 276 QAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQFARELNIGFEIDFALIRTFELLSFKAI 372
                 **********************************877666689***********66..99999**********************99************ PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres..eerikvEre 288
                 ++ +gE++aV l+ +++r +          + +++ ++++sP+vvv+v++e  + +n+ sF + +++ le+ys+l+dsl +a+++  +  ++++k+E+ 
  PHT56547.1 373 KFMEGEKTAVLLSPAIFRRV------G---SGFVNDLRRISPNVVVHVDSEglMGYNAMSFRQTVIDGLEFYSTLLDSLeAANIGGGNcgDWMRKIENY 462
                 ******************98......3...48*******************88888***********************88999999999********* PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +l ++iv++va+ g++        ++W++++  aGF+p+ ls++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++SaWr
  PHT56547.1 463 VLFPKIVDMVAAIGRR-GVGFGGGGSWKDAMVGAGFRPMGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWR 547
                 **************96.8888999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MKVPFSTNDN VSSKPLISNN NNNNNLRNVT FPAATNGPNL CYEPKSVLEL RRSPSPIVEK  60
QITTNPDLSA LCGSEDPLQL GDHVLSNFED WDSLMRELGL HDDSASLSKT NPQLSLTHSE  120
SLTHFHNLSD FSADSTQFAS PDFSFSESTF PQQFAAVNQG SFINALDLSG DIHQNWNVGF  180
DYVDELIRFA ECFETNAFQL AHVILARLNQ RLRSAAGKPL QRAAFYFKEA LQAQLAGSTR  240
QTRPSSSSDV IQTIKSYKIF SNISPIPMFS SFTANQAVLE AVDGSMLVHV IDFDIGLGGH  300
WASFMKELAD KAECRKANAP VLRITALVPE EYAVESRLIR ENLTQFAREL NIGFEIDFAL  360
IRTFELLSFK AIKFMEGEKT AVLLSPAIFR RVGSGFVNDL RRISPNVVVH VDSEGLMGYN  420
AMSFRQTVID GLEFYSTLLD SLEAANIGGG NCGDWMRKIE NYVLFPKIVD MVAAIGRRGV  480
GFGGGGSWKD AMVGAGFRPM GLSQFADFQA DCLLGRVQVR GFHVAKRQAE MLLCWHDRAL  540
VATSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-144GRAS family protein