PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT51941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19389 Da PI: 9.3928 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.8 | 3.2e-09 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ + r+ tfskRr g+ KKA+ L +++ +++ s+ g+ y++ PHT51941.1 11 IKKDVDRYSTFSKRRSGLYKKASKLVRENNVDLGIVLSSPAGNAYTF 57 889999*************************************9999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MGRQKIPLVK IKKDVDRYST FSKRRSGLYK KASKLVRENN VDLGIVLSSP AGNAYTFFHP 60 THNEVIDRFM NLKTDLGEQI IAENSLNKVN QPNGRLNELD KRGEVAKEKF ISLPQRIKSR 120 DKGRWESIDQ LNADDVIKFQ AWLDVEEIML KDQLPEASSS SQSPSEDADI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-20 | M-type_MADS family protein |