PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48928.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 359aa MW: 40151.4 Da PI: 6.8284

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H PHT48928.1 157 YECKTCNRTFSSFQALGGHRASH 179 99**********99999998887 PP
2	zf-C2H2	14.3	0.00012	253	275	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PHT48928.1 253 HTCSYCGAEFTSGQALGGHMRRH 275 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEEAPREEVM GVSKGKRTKR VRPQSLIPFM TINAHSSSTG DGNNDGMVHE EISIVNNNNY 60 NNNNSSPPPA TSDKNFPDEE VGPTEEEEET AKCLILLSQG GSQGGHHPYH HHHQTPPIKF 120 FDLFNDDMGL YQPKFNSKKY VETTDLGNGA KAGTYVYECK TCNRTFSSFQ ALGGHRASHR 180 KPKPLTIEPK KQPFFYFSDQ DDPSPTTTTT TPNYKHYNKL LSPTLSPLST QFSNIIMDST 240 PNYNKSLSSP RIHTCSYCGA EFTSGQALGG HMRRHRGGAN TNNTILCLSP LSIDQESTNY 300 NLKKPRNGLS LDLNFPAPQE YQNHPPKYPQ EQAQQQQQEE EQETALVLST TPQLIGCHY

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEEAPREEVM GVSKGKRTKR VRPQSLIPFM TINAHSSSTG DGNNDGMVHE EISIVNNNNY  60
NNNNSSPPPA TSDKNFPDEE VGPTEEEEET AKCLILLSQG GSQGGHHPYH HHHQTPPIKF  120
FDLFNDDMGL YQPKFNSKKY VETTDLGNGA KAGTYVYECK TCNRTFSSFQ ALGGHRASHR  180
KPKPLTIEPK KQPFFYFSDQ DDPSPTTTTT TPNYKHYNKL LSPTLSPLST QFSNIIMDST  240
PNYNKSLSSP RIHTCSYCGA EFTSGQALGG HMRRHRGGAN TNNTILCLSP LSIDQESTNY  300
NLKKPRNGLS LDLNFPAPQE YQNHPPKYPQ EQAQQQQQEE EQETALVLST TPQLIGCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-38	C2H2 family protein