PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46573.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 477aa MW: 52880.8 Da PI: 6.8581

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7e-13	331	377	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq PHT46573.1 331 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 377 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MGEKLFLKGE DKVIMEGLLG SEAVEFFSWS ASNHMLTEFT SSRGDLGVQQ VLCKIVEGSD 60 WTYAIYWQVA KSKSGKSALI WGDGHCREAK MGQSEGGSDS AHQKMMDGNK KKMVLQKIHT 120 CFGGSDDDNI AAKLDSVSDV EVFYLTSMYY IFPFDKPSSP SQSFNSARSI WVSDYKGCSE 180 HFQSRSYLAK LARFETLVFV PLKSGVVELG SVKSIPEDQN LIQMVKASVV VSNPPQPKAI 240 PKIFGRELSL GGAKSGPISI NFSPKMEDDL SFASDSYEVQ AALGSSQVYG NSSNGYRSDE 300 GEGKLYKEEL DDRKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM 360 DKASLLGDAI AYITDLQARI RVLDAEKEMV SDKQKQQVIP EIDFHQRQDD AVVRVGCPLN 420 AHPVSTVLKT FQEHQLVPQE SNVSLTENSE LVHTFSIRAP GSAAEDLKEK LTAALAK

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MGEKLFLKGE DKVIMEGLLG SEAVEFFSWS ASNHMLTEFT SSRGDLGVQQ VLCKIVEGSD  60
WTYAIYWQVA KSKSGKSALI WGDGHCREAK MGQSEGGSDS AHQKMMDGNK KKMVLQKIHT  120
CFGGSDDDNI AAKLDSVSDV EVFYLTSMYY IFPFDKPSSP SQSFNSARSI WVSDYKGCSE  180
HFQSRSYLAK LARFETLVFV PLKSGVVELG SVKSIPEDQN LIQMVKASVV VSNPPQPKAI  240
PKIFGRELSL GGAKSGPISI NFSPKMEDDL SFASDSYEVQ AALGSSQVYG NSSNGYRSDE  300
GEGKLYKEEL DDRKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  360
DKASLLGDAI AYITDLQARI RVLDAEKEMV SDKQKQQVIP EIDFHQRQDD AVVRVGCPLN  420
AHPVSTVLKT FQEHQLVPQE SNVSLTENSE LVHTFSIRAP GSAAEDLKEK LTAALAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	313	321	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-150	bHLH family protein