PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT45378.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 263aa    MW: 27848.8 Da    PI: 7.6917
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT45378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.4e-08128154127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++Cr+  ++G+CkyG++Ck++H+p
  PHT45378.1 128 PGQPECRYCVKFGECKYGSSCKYHHPP 154
                 57899********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MAVAQNCILN GPTHPIVVIT GGMDSVAYGA RCRFNHPRNR SLVSGSYLPG TYGPTLIPPE  60
MVPMPDWTSY PAFASPVVSQ STQSAGVGPV YGPMQLCAST LVGPCMSLTA SPSASINIQK  120
EFAFLNRPGQ PECRYCVKFG ECKYGSSCKY HHPPQCYGSS LRPSAFSALI IPELKREDNF  180
FLFFLLLLSP SASFLADMPV APYPGGSFVG TLDPSSSSSD LRPELVSGSS KEVFSTQASS  240
MSAASDPVGS MFSKGHPVSH SGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-25C3H family protein