PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G47850.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 442aa    MW: 47053.1 Da    PI: 8.956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G47850.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.6e-114872327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  + C +++rtG C yG+rC+++H++
  AT2G47850.2 48 APDCAYYMRTGVCGYGNRCRYNHPR 72
                 589********************96 PP
2zf-CCCH40.54.6e-1391117127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tGtCk+G++CkF+H++
  AT2G47850.2  91 FGEPPCQFYLKTGTCKFGASCKFHHPK 117
                  5799*********************96 PP
3zf-CCCH37.93e-12264290127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++++tG Ck+G +CkF+H++
  AT2G47850.2 264 PGEPECQYYLKTGDCKFGTSCKFHHPR 290
                  5799*********************96 PP
4zf-CCCH32.51.4e-10311336227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +  +C f+ ++G+Ck+G++CkF H++
  AT2G47850.2 311 GVQRCTFYVQNGFCKFGSTCKFDHPM 336
                  6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8824573IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54572IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-84872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-65074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-55172IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-790117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.5390118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-691118IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1091117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-595116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356263291IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5263290IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9265290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5269291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23309337IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5309336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6311340IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8311336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5315335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MYARNPPLNG SQSAQAPDWT PADADTGLQE SMWRLGLGSD SYPERPGAPD CAYYMRTGVC  60
GYGNRCRYNH PRDRASVEAT VRATGQYPER FGEPPCQFYL KTGTCKFGAS CKFHHPKNAG  120
GSMSHVPLNI YGYPVREPAG TTVPPPPASA PQFYPSVQSL MPDQYGGPSS SLRVARTLLP  180
GSYMQGAYGP MLLTPGVVPI PGWSPYSAPV SPALSPGAQH AVGATSLYGV TQLTSTTPSL  240
PGVYPSLSSP TGVIQKEQAF PERPGEPECQ YYLKTGDCKF GTSCKFHHPR DRVPPRANCV  300
LSPIGLPLRP GVQRCTFYVQ NGFCKFGSTC KFDHPMGTIR YNPSASSLAD APVAPYPVSS  360
LLGALAAAPS SSSTELIAGG AKDAYMTGVP TSRSTSNISA GLIFSQSGGS IPFSELQLSS  420
QSSLPLTGSR ITRQGREIRR SF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.210060.0bud| flower| root| seed| silique| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306908080.0
Genevisible266506_at0.0
Expression AtlasAT2G47850-
AtGenExpressAT2G47850-
ATTED-IIAT2G47850-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G47850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G47850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078077.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA8MR170.0A8MR17_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAT2G47850.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]