PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT41235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17792.3 Da PI: 5.3638 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.6 | 5.2e-16 | 12 | 59 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i + r vtfskRr g++KK + L L+d +v ++fs+tgkly+y PHT41235.1 12 KITKPTYRMVTFSKRRMGLFKKSQKLESLTDSRVVSVVFSPTGKLYTY 59 6777899****************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence |
MGTGKKKIEI KKITKPTYRM VTFSKRRMGL FKKSQKLESL TDSRVVSVVF SPTGKLYTYG 60 DVDYAIEKYF SGNSSTSAAV PSIPVLDYMD YYSCSEVPST SSLMTPRRDG FRDWVDSIDV 120 DECENLNRLL MLKEQLEGSI EKIVSNEDSE SFEALFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-13 | MIKC_MADS family protein |