PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT41229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19094.7 Da PI: 10.3673 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.1 | 1.7e-16 | 28 | 75 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ++ r tfskRr+g++KKA+EL +++ +va i++ss+gk y++ PHT41229.1 28 KITKQTSRMATFSKRRKGLFKKAKELESMTGSRVASIVISSSGKPYTW 75 688999*****************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MENLLVEEEE KKKLRRMGTG KKKIEIQKIT KQTSRMATFS KRRKGLFKKA KELESMTGSR 60 VASIVISSSG KPYTWGDVNS VIQMHFSGNS SSRCTEPSTS GLNSHHSNSE DVVVASGNSS 120 GRRSGLRHWV ESIDVEGCQN LNQLLMLKQQ LEGTREKIAS IEDSASFQAL FA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 51 | KKLRRMGTGKKKIEIQKITKQTSRMATFSKRRKGLFKKAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-10 | M-type_MADS family protein |