PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT40757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 21691.6 Da PI: 7.0431 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.5 | 1.5e-12 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ k qvtfsk r ++K A E ++L ++e+a+i++s+ k++ + PHT40757.1 18 IDVKNHLQVTFSKCRSSLFKTATEQCTLYGVEIAIIVYSPARKVFSF 64 6777888**********************************999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence |
MAKKPSSMGH QKIKISKIDV KNHLQVTFSK CRSSLFKTAT EQCTLYGVEI AIIVYSPARK 60 VFSFGHRNVE SLIDSLQLTQ ILGEVEIEKK RGESLDQMRK TSQSQCWWEA PISQLDFQEL 120 EQLKDSMDIL KNYVTNQANK FMVNEIANSS TFFGDNGNGI FDNYDIKPDR TMPSSNDLHN 180 HSLGFDSAAL F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-38 | M-type_MADS family protein |