PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT40730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25003.6 Da PI: 8.9453 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.2 | 1.6e-21 | 17 | 64 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++e+a+i+fs+ k++ + PHT40730.1 17 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVFSF 64 58888899**********************************999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MAKKPSSMGR QKIKIAKIEV KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPARK 60 VFSFGHPNVE SLIDRFLSRN NTNNNPFANN SLQLVDALPN ANVCGLNLQL TQILGEVEIE 120 KKRGESLDQM RKTSQSQCWW EAPISQLDLQ ELEQLKDSME ALKKYVTNQA SKFMVNEIAN 180 SSTFFGDNGN GIFDNYDMKP PRTMPSSSDL HNHSLGFDSA ALF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-54 | M-type_MADS family protein |