PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39579.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 962aa MW: 104920 Da PI: 6.3974

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.9e-29	570	621	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PHT39579.1 570 AEKTISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 621 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence
MSKELTPPQQ PPYTAPTTAA MDLDFDSWSF DQIFAAAASP LMLPCSPLWT FSDDYDEKIA 60 GNGVSSGLRR FVAYTGDPEA TTETVAVNAD KGRIPPPTSG LIPGNNPDGS CIIKERMSQA 120 LRYLKESTRE RVLAQVWAPV KEAGRSVLTT SGQPFVLDPD CNGLHQYRTV SLMYMFAADG 180 DTGGVLGLPG RVFRLKLPEW TPNVQYYSSK EFPRLDHALH YNVRGTLALP VFEPSGQSCV 240 GVLELIMTSQ KINYAAEVDK VCKALKAVNL KSSEILDHPK TQVNGMGYMN QICNEGRQNA 300 LVEILEILTA VCETYKLPLA QTWVPCRHRS VLADGGGLKK SCSSFDGSCM GQICMSTTDV 360 SFYVVDAHMW GFREACAEHH LQKGQGVAGR AYASQRSCFC EDITQFCKTE YPLVHYARLF 420 GLTSCFAICL RSSLTGNDDY ILEFFLPPDS RDYNDQQALF NSLLVTMKQH FRSLRIASGG 480 ELEHDWSSVE IIKASTEEKI DTKPESVPVL KSLPQPTSLP NGSTHLDLLR EQQLAAGSDV 540 AKGAGEAPNG VSNADNKVVG KKSEKKRGKA EKTISLEVLQ QYFSGSLKDA AKSLGVCPTT 600 MKRICRQHGI SRWPSRKINK VNRSLSKLKC VIESVQGAEG TFTLTSLAPN SLPAAVSSIS 660 WPNGANGPNL PSSPSSKPSV FHEEKNEFTA HGTPESREEA EPSNEMLGGR ISRKEELSPP 720 QNGFLHAEGS RKSRTGSVSK EESAGTPTSH GSCQGSPNAG NEFSPSNELV NSPARELCMK 780 VGGSLEASHQ TTKEISLGSL KEHNQKLFRG MLVEDAGSSH DLRNLCSPGD ALVDERVQEY 840 NLTNPPFSDA TAKDPVYVHA AWPEVTSVTI KATYKDDIIR FRLSLSSGIF KLKEEVAKRL 900 KLELGTFDIK YLDDDLELVS ISCDADLQEC VDISRSSGSS IVRLLVLDIM SNLGSSCESS 960 GK

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence

MSKELTPPQQ PPYTAPTTAA MDLDFDSWSF DQIFAAAASP LMLPCSPLWT FSDDYDEKIA  60
GNGVSSGLRR FVAYTGDPEA TTETVAVNAD KGRIPPPTSG LIPGNNPDGS CIIKERMSQA  120
LRYLKESTRE RVLAQVWAPV KEAGRSVLTT SGQPFVLDPD CNGLHQYRTV SLMYMFAADG  180
DTGGVLGLPG RVFRLKLPEW TPNVQYYSSK EFPRLDHALH YNVRGTLALP VFEPSGQSCV  240
GVLELIMTSQ KINYAAEVDK VCKALKAVNL KSSEILDHPK TQVNGMGYMN QICNEGRQNA  300
LVEILEILTA VCETYKLPLA QTWVPCRHRS VLADGGGLKK SCSSFDGSCM GQICMSTTDV  360
SFYVVDAHMW GFREACAEHH LQKGQGVAGR AYASQRSCFC EDITQFCKTE YPLVHYARLF  420
GLTSCFAICL RSSLTGNDDY ILEFFLPPDS RDYNDQQALF NSLLVTMKQH FRSLRIASGG  480
ELEHDWSSVE IIKASTEEKI DTKPESVPVL KSLPQPTSLP NGSTHLDLLR EQQLAAGSDV  540
AKGAGEAPNG VSNADNKVVG KKSEKKRGKA EKTISLEVLQ QYFSGSLKDA AKSLGVCPTT  600
MKRICRQHGI SRWPSRKINK VNRSLSKLKC VIESVQGAEG TFTLTSLAPN SLPAAVSSIS  660
WPNGANGPNL PSSPSSKPSV FHEEKNEFTA HGTPESREEA EPSNEMLGGR ISRKEELSPP  720
QNGFLHAEGS RKSRTGSVSK EESAGTPTSH GSCQGSPNAG NEFSPSNELV NSPARELCMK  780
VGGSLEASHQ TTKEISLGSL KEHNQKLFRG MLVEDAGSSH DLRNLCSPGD ALVDERVQEY  840
NLTNPPFSDA TAKDPVYVHA AWPEVTSVTI KATYKDDIIR FRLSLSSGIF KLKEEVAKRL  900
KLELGTFDIK YLDDDLELVS ISCDADLQEC VDISRSSGSS IVRLLVLDIM SNLGSSCESS  960
GK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein