PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39067.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 427aa MW: 48227.7 Da PI: 7.1834

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.5	9.7e-17	105	151	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++sledl+++F ++ ++AA +L+v+ ++ KriC ++GI+RWP+ kik PHT39067.1 105 SVSLEDLKEQFGKKREEAAESLNVSISTFKRICQEHGISRWPYTKIK 151 689*******************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MLSMETKSEN PVCSKPVQIV DESPKFQCMQ LDAKCTAEES PLHIVPSRGD CALPVPFQQR 60 SITEHVNLKR KVDTGPSGQD VTIFELCNKQ KINEKYKKTW RIGDSVSLED LKEQFGKKRE 120 EAAESLNVSI STFKRICQEH GISRWPYTKI KRERLLLSSL SCNGTDRVAA NTQMQITKGL 180 TALASTFSVK SNQQKSQSLN LSVNNENGTS LNGNLLEKNE DGDRENIMIQ VEDSSNQELV 240 YIPQEFRPAC DSLIPDVPTI LSRLPRERMP AEDATQLISS APGQQGELIA RQIEMTSEIS 300 QLEKQHLGRK GSNVISLLKT RHHAIPEMFQ SQFNQKFLAE TEKIRDLAET SVKDEESLNV 360 RYEELKRKEQ ELMAQLEAVQ KETAGIAEQR NEKSKQTKHL VSLAEEKTAS STKEKHMMKI 420 ATTKLNN

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MLSMETKSEN PVCSKPVQIV DESPKFQCMQ LDAKCTAEES PLHIVPSRGD CALPVPFQQR  60
SITEHVNLKR KVDTGPSGQD VTIFELCNKQ KINEKYKKTW RIGDSVSLED LKEQFGKKRE  120
EAAESLNVSI STFKRICQEH GISRWPYTKI KRERLLLSSL SCNGTDRVAA NTQMQITKGL  180
TALASTFSVK SNQQKSQSLN LSVNNENGTS LNGNLLEKNE DGDRENIMIQ VEDSSNQELV  240
YIPQEFRPAC DSLIPDVPTI LSRLPRERMP AEDATQLISS APGQQGELIA RQIEMTSEIS  300
QLEKQHLGRK GSNVISLLKT RHHAIPEMFQ SQFNQKFLAE TEKIRDLAET SVKDEESLNV  360
RYEELKRKEQ ELMAQLEAVQ KETAGIAEQR NEKSKQTKHL VSLAEEKTAS STKEKHMMKI  420
ATTKLNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	6e-10	Nin-like family protein