PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39061.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 618aa MW: 70257.1 Da PI: 4.8003

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59	8.8e-19	222	268	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++sledl++ F ++ +dAA +L+v+ ++LKriCR++GI+RWP+ kik PHT39061.1 222 SVSLEDLKELFGKKREDAAESLNVSISTLKRICREHGISRWPSSKIK 268 689*******************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MLEQHEVELG EMELEINSNM VNPLISSPAS TCWQIQQVWE PDNMLYFDCS ELPPSPMEDF 60 TLWNHSWSPP PPYHQESEMQ GKIADNNTLR ISGALVYWLP YFDLARSLRK AEEFLKKFWK 120 ELREQQNIID VRFKKKAYTA GTSQCMQLDA KSPAEESPLH IVPSRGDCAL PVPFQQRSIT 180 EHVNLKRKVD TGPSGQDVTI FELCNKQKMN KKYKKTWRIG DSVSLEDLKE LFGKKREDAA 240 ESLNVSISTL KRICREHGIS RWPSSKIKRE RLLLSSLSCN GTDRVAANTQ MRITKGLTAL 300 ASTFSVKSNQ QKSRSSNLSI NDENGTSSNG NLLEKNENSD SENIMIQVED SANQELVYIP 360 QEFGPACDSL IPDVPTILSR LPRERMPAED ATQLIASAPG QQGERIARQI DMTSEISQLE 420 KQHLGEERFK CDLSVEDSSS YDSRNVSEPI QGHAIVDSTH MEVQPLLESV STQPLNSFSC 480 HENTAKNTKL LFNNLIMLTV EDLIDPENET SMTKALPILA DNLSLFSEEQ AEQILELSVY 540 FPTLVHSWRE FSQSQTYNQK SLAETGKIRD LVETSVKDEE CLSIRYEELE RKEQELMAQL 600 EAVQKEKARI AEQRSEKS

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MLEQHEVELG EMELEINSNM VNPLISSPAS TCWQIQQVWE PDNMLYFDCS ELPPSPMEDF  60
TLWNHSWSPP PPYHQESEMQ GKIADNNTLR ISGALVYWLP YFDLARSLRK AEEFLKKFWK  120
ELREQQNIID VRFKKKAYTA GTSQCMQLDA KSPAEESPLH IVPSRGDCAL PVPFQQRSIT  180
EHVNLKRKVD TGPSGQDVTI FELCNKQKMN KKYKKTWRIG DSVSLEDLKE LFGKKREDAA  240
ESLNVSISTL KRICREHGIS RWPSSKIKRE RLLLSSLSCN GTDRVAANTQ MRITKGLTAL  300
ASTFSVKSNQ QKSRSSNLSI NDENGTSSNG NLLEKNENSD SENIMIQVED SANQELVYIP  360
QEFGPACDSL IPDVPTILSR LPRERMPAED ATQLIASAPG QQGERIARQI DMTSEISQLE  420
KQHLGEERFK CDLSVEDSSS YDSRNVSEPI QGHAIVDSTH MEVQPLLESV STQPLNSFSC  480
HENTAKNTKL LFNNLIMLTV EDLIDPENET SMTKALPILA DNLSLFSEEQ AEQILELSVY  540
FPTLVHSWRE FSQSQTYNQK SLAETGKIRD LVETSVKDEE CLSIRYEELE RKEQELMAQL  600
EAVQKEKARI AEQRSEKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-13	Nin-like family protein