PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025314.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 454aa MW: 50624.2 Da PI: 5.5294

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025314.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.8	5e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v PCP025314.1 16 ARACDSCIKKRARWYCAADDGFLCQACDSAVHSAnqlahrHKRV 59 578****************************9668899556655 PP
2	CCT	67.9	2.7e-23	399	442	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a PCP025314.1 399 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 442 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MNSSKKVAHA VGGKTARACD SCIKKRARWY CAADDGFLCQ ACDSAVHSAN QLAHRHKRVL 60 LKTASSLKPS NKDDRASAVS ETSAAPSWHR GFTRKARTPR GGKSMTHHGK SEEGVRNLFP 120 QVPEVGGDDI NSYDEENKED QQLLYRVPIF DPFVAELCNN SGNSNEDAVA NYEAHNLSTV 180 SDHVGSESKA VSSLPNFNCH DGFLLPSDMD LAEFAADVDS LLGRGVDDDE CFGMERLGFM 240 DCKKKESNGR VKLEEDDDQE GTDNVDFMGC QLGESEIDMM REPFALNFED YDDSPASCGE 300 QDDKLRVGIY SKCSTEDHER EDADDDARDN SKKRKMILRL DYEAVITAWD GSPWTSGDRP 360 DFDSECLPDY MGACGAELHY PYGDMNGLGV HPAMVDGGRE ARVSRYREKR RTRLFSKKIR 420 YEVRKLNAEK RPRMKGRFVK RASFAGSAFP VLAK

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MNSSKKVAHA VGGKTARACD SCIKKRARWY CAADDGFLCQ ACDSAVHSAN QLAHRHKRVL  60
LKTASSLKPS NKDDRASAVS ETSAAPSWHR GFTRKARTPR GGKSMTHHGK SEEGVRNLFP  120
QVPEVGGDDI NSYDEENKED QQLLYRVPIF DPFVAELCNN SGNSNEDAVA NYEAHNLSTV  180
SDHVGSESKA VSSLPNFNCH DGFLLPSDMD LAEFAADVDS LLGRGVDDDE CFGMERLGFM  240
DCKKKESNGR VKLEEDDDQE GTDNVDFMGC QLGESEIDMM REPFALNFED YDDSPASCGE  300
QDDKLRVGIY SKCSTEDHER EDADDDARDN SKKRKMILRL DYEAVITAWD GSPWTSGDRP  360
DFDSECLPDY MGACGAELHY PYGDMNGLGV HPAMVDGGRE ARVSRYREKR RTRLFSKKIR  420
YEVRKLNAEK RPRMKGRFVK RASFAGSAFP VLAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	410	426	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	1e-92	CO-like family protein