PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009714.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 452aa MW: 49961.4 Da PI: 5.0561

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009714.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29	2.2e-09	16	60	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +r C+ + +k+++++C ++ +lCe C + H+ H++v PCP009714.1 16 ARACDSCIKKRARWYCAADDAFLCEACDSDVHSAnqlarrHERVL 60 578*****************************6578888898875 PP
2	CCT	68.3	2.1e-23	397	440	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ PCP009714.1 397 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 440 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MNSSKKVAHA VGGKTARACD SCIKKRARWY CAADDAFLCE ACDSDVHSAN QLARRHERVL 60 LKTASSLKPS NKDDRTTAVS KTSAAPSWHR GFTRKPRTPR GGKSMTHHGK SKEGIRNLFP 120 QVPEVGGDDN NSYDEENEED QQLLYRVPIF DPSVAELCSN SGNSSEDAAA NYEANLSTVS 180 DNVGSQSKAV SSLPNCNGHD GFLLPSDMDL AEFAADVDSL LGRGLNDDQC IGMEGLGLRD 240 CKEKESKGRV KLEEDDDQDG IDGVDFMGCQ LGESEIDMMK EPFVLNFEDY DDSPASCGEQ 300 DDKMIVGIDS NCTEDHEHEE ADEDAIDNSK KRKTILRLDY EAVITAWDGS PWTSGDRPDF 360 DSECLPDYMG VCGPGLHYPY GDLNGIGVHP AMVDGGREAR VSRYREKRRT RLFSKKIRYE 420 VRKLNAEKRP RMKGRFVKRS SFAGSAFPVL AK

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MNSSKKVAHA VGGKTARACD SCIKKRARWY CAADDAFLCE ACDSDVHSAN QLARRHERVL  60
LKTASSLKPS NKDDRTTAVS KTSAAPSWHR GFTRKPRTPR GGKSMTHHGK SKEGIRNLFP  120
QVPEVGGDDN NSYDEENEED QQLLYRVPIF DPSVAELCSN SGNSSEDAAA NYEANLSTVS  180
DNVGSQSKAV SSLPNCNGHD GFLLPSDMDL AEFAADVDSL LGRGLNDDQC IGMEGLGLRD  240
CKEKESKGRV KLEEDDDQDG IDGVDFMGCQ LGESEIDMMK EPFVLNFEDY DDSPASCGEQ  300
DDKMIVGIDS NCTEDHEHEE ADEDAIDNSK KRKTILRLDY EAVITAWDGS PWTSGDRPDF  360
DSECLPDYMG VCGPGLHYPY GDLNGIGVHP AMVDGGREAR VSRYREKRRT RLFSKKIRYE  420
VRKLNAEKRP RMKGRFVKRS SFAGSAFPVL AK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	408	424	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	2e-88	CO-like family protein