PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89261.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 384aa MW: 42946.1 Da PI: 6.731

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl OWM89261.1 14 KGPWSPEEDAKLKAYIEKYGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.8	2.2e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ OWM89261.1 69 GGFTEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MGRAPCCDKD NVKKGPWSPE EDAKLKAYIE KYGTGGNWIA LPHKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSNARGRL GTNVGADGPQ DSSSSPSELS HSAFERLQLH LQLQSLQSPL SNYFYSNPAL 180 WPKLHPLLQE RIIQSLHLLP QQNLGQTLDL HTPGPECDNV RGSHSEDEPN GEFYFPAMTS 240 IQPAAQHDSL RVIYEKIENL ESSQVESGAY SDALYDTRSL ALGSPNSISS CSGGSMPMNY 300 RCGVIEPNID QYSNIHNNIT ELDQNTLVSK TGGIMSPEDQ ASDYFKESNG SKDSFLWGSI 360 DFEMRAGPSM SWDTTSVMRH EGIY

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MGRAPCCDKD NVKKGPWSPE EDAKLKAYIE KYGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSNARGRL GTNVGADGPQ DSSSSPSELS HSAFERLQLH LQLQSLQSPL SNYFYSNPAL  180
WPKLHPLLQE RIIQSLHLLP QQNLGQTLDL HTPGPECDNV RGSHSEDEPN GEFYFPAMTS  240
IQPAAQHDSL RVIYEKIENL ESSQVESGAY SDALYDTRSL ALGSPNSISS CSGGSMPMNY  300
RCGVIEPNID QYSNIHNNIT ELDQNTLVSK TGGIMSPEDQ ASDYFKESNG SKDSFLWGSI  360
DFEMRAGPSM SWDTTSVMRH EGIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	6e-80	MYB family protein