PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87769.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 386aa MW: 40187 Da PI: 7.3698

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.1	4e-35	99	202	2	100
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ +++ +++ OWM87769.1 99 TTRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsV-------GGTLKIPttppggdpnap 190 57999***********************************************************7777744421.......111111111111122222 PP TCP 89 kaaksaakskks 100 ++ ++a +skk+ OWM87769.1 191 NHPSAADSSKKR 202 222222211111 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MEDHDDDGAA ASDLSTSVGD PDGDYDPSRH ALPEHSATVE HPIPFQAIPL KHEPVDSDPA 60 SEPDSKPQHG PLAMVSVAMQ MQMQMQPLPV VPVATTPVTT RRSSTKDRHT KVEGRGRRIR 120 IPATCAARIF QLTRELGHKS DGETVRWLLE HAEQAIIEAT GTGTVPAIAV SVGGTLKIPT 180 TPPGGDPNAP NHPSAADSSK KRKRPSASEF CEVTSSSNPT VPIAAAPQGL VPVWAVGNGG 240 MVVPANAFWM IPQAAAGATP GGPPAAQQIW AISPTMAPIF NVAAAARPIS SYVEAAANRT 300 VTQQQASDAR GSVSNSAAST SLVGAKVAKK STMAPSVSSS SGGGSNSNNN TAKSSRGKAQ 360 MLRDFSLEIY DKQELQLMGG GARREQ

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MEDHDDDGAA ASDLSTSVGD PDGDYDPSRH ALPEHSATVE HPIPFQAIPL KHEPVDSDPA  60
SEPDSKPQHG PLAMVSVAMQ MQMQMQPLPV VPVATTPVTT RRSSTKDRHT KVEGRGRRIR  120
IPATCAARIF QLTRELGHKS DGETVRWLLE HAEQAIIEAT GTGTVPAIAV SVGGTLKIPT  180
TPPGGDPNAP NHPSAADSSK KRKRPSASEF CEVTSSSNPT VPIAAAPQGL VPVWAVGNGG  240
MVVPANAFWM IPQAAAGATP GGPPAAQQIW AISPTMAPIF NVAAAARPIS SYVEAAANRT  300
VTQQQASDAR GSVSNSAAST SLVGAKVAKK STMAPSVSSS SGGGSNSNNN TAKSSRGKAQ  360
MLRDFSLEIY DKQELQLMGG GARREQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	8e-59	TCP family protein