PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87407.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 274aa MW: 30160.6 Da PI: 5.1387

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.7	1.5e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l+++v+q+G+++W++I++ ++ gR++k+c++rw + OWM87407.1 13 KGSWSPEEDATLIKLVEQHGPRNWSLISSGIP-GRSGKSCRLRWCNQ 58 799***************************.*********985 PP
2	Myb_DNA-binding	55.3	1.5e-17	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ OWM87407.1 67 AFTPAEDAIIIEAHRTHGNK-WATIARLLP-GRTDNAIKNHWNST 109 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MKVTTVEGVD RVKGSWSPEE DATLIKLVEQ HGPRNWSLIS SGIPGRSGKS CRLRWCNQLS 60 PFVHHRAFTP AEDAIIIEAH RTHGNKWATI ARLLPGRTDN AIKNHWNSTL RRRRPPRPAP 120 VLGGPDSPSD SAVVKRPLSP LDGHEEESSK RQRLGGCNRV EAGLDDIDIK TSLTLSPPGE 180 TCTSAPKEED DDEEDNDDDA AEDIDREEEE EEADRSNKVA VGMAQDNACL VTVMKRMIAE 240 EVRKYIDTLW AQSNAPGPGP LPGPGLSFTV KKDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	1e-52	MYB family protein