PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM80625.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

AP2

Protein Properties

Length: 613aa MW: 66445 Da PI: 7.4848

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM80625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.1	1.8e-12	268	324	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g OWM80625.1 268 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 324 78*****************77776664346655.77****************98 PP
2	AP2	45.8	1.5e-14	369	418	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OWM80625.1 369 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MKSMSDNNGC GSNWLGFSLS PHMKMEAAAV TSGHPVSPSS VPTSYVLSSS PSPHQGLCSY 60 GGESISISST TSSINGGAGF HYSAAPPPLS VMPLKSDGSL CIMEALSRSH PQGIVPSAPP 120 KLEDFLTIGG AHHHHHHHHH HGYGGEREAM PLSLDTIYYP TMGDLGTDSL CLRNWVTGGG 180 REYEQSIESN GAGSAVIGCG GGELQSLSLS MSPGSQSSCV TTAPSTQQIS ASSEMVAVET 240 GKKRGLDKVG QKQTVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG 300 RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQEEL EEMKNMSRQE YVAHLRRKSS 360 GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN 420 AVTNFDITRY DVERIMASNT LLAGELARRN KEIEPTNIEV VADYGHGSLP RNSMEAGIQP 480 QSNNNGIGSD WKMVLYNSPQ QHQQENNCMR SSFSVAMQDL IGMESVNLGH HPTEEDHKLG 540 GHNFSNPSSL VTSLGSSREG SPERIGQGGL GFGKPPLGSK FMALPSGSVS SPWFPSAGIS 600 MSHLPMFAAW GDT

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MKSMSDNNGC GSNWLGFSLS PHMKMEAAAV TSGHPVSPSS VPTSYVLSSS PSPHQGLCSY  60
GGESISISST TSSINGGAGF HYSAAPPPLS VMPLKSDGSL CIMEALSRSH PQGIVPSAPP  120
KLEDFLTIGG AHHHHHHHHH HGYGGEREAM PLSLDTIYYP TMGDLGTDSL CLRNWVTGGG  180
REYEQSIESN GAGSAVIGCG GGELQSLSLS MSPGSQSSCV TTAPSTQQIS ASSEMVAVET  240
GKKRGLDKVG QKQTVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG  300
RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQEEL EEMKNMSRQE YVAHLRRKSS  360
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN  420
AVTNFDITRY DVERIMASNT LLAGELARRN KEIEPTNIEV VADYGHGSLP RNSMEAGIQP  480
QSNNNGIGSD WKMVLYNSPQ QHQQENNCMR SSFSVAMQDL IGMESVNLGH HPTEEDHKLG  540
GHNFSNPSSL VTSLGSSREG SPERIGQGGL GFGKPPLGSK FMALPSGSVS SPWFPSAGIS  600
MSHLPMFAAW GDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-139	AP2 family protein