PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM77617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 145aa MW: 16496.6 Da PI: 4.8628 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38 | 2.1e-12 | 2 | 40 | 11 | 49 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +tfskRr gi KKA+EL +aev ++ fs+t k y + OWM77617.1 2 ITFSKRRSGIYKKASELVAIGGAEVGIVAFSPTEKPYSF 40 7********************************998877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MITFSKRRSG IYKKASELVA IGGAEVGIVA FSPTEKPYSF RHPFVQAVIN KFLNRNASLP 60 ADDRREERIC QRITCDTSEG NPPNWERRWW EKPPEELSFD ELKEEALFLE ALSRAICNIL 120 NYPDDLHALG LWVEVGASSV QDGQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-19 | M-type_MADS family protein |