PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM70825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27636.8 Da PI: 7.3128 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.3 | 1.8e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien+ nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s OWM70825.1 9 KRIENTANRQVTFSKRRNGLIKKAYELSVLCDVDIALIMFSPSGRLSLFS 58 79*******************************************98776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MGRVKLQMKR IENTANRQVT FSKRRNGLIK KAYELSVLCD VDIALIMFSP SGRLSLFSGH 60 NKSIEEVLRR YVDLPEQDSG SLASSDSPVE AVDATELIMI HHELLRCKSQ LDDKEKQLRV 120 YEGDPREITT LPELQCREEI LQETLRQQLL EKSYISTSPD SKRNLGWLLQ RDPQVQILNF 180 LGSNVLLPSS ILSQQLVSKP GCCDQILKIL VARFEVEKID GSSGSGLCRS SGRYCWCNMA 240 LVEH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-41 | MIKC_MADS family protein |