PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM70245.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 405aa MW: 44486.3 Da PI: 7.941

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM70245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H OWM70245.1 141 YQCKTCNRTFPSFQALGGHRASH 163 9***********99999998887 PP
2	zf-C2H2	12.8	0.00036	250	272	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H OWM70245.1 250 HECSICGAEFTSGQALGGHMRRH 272 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MVGYRLSCLA VSCEVSDCRE MEEHAGPIVK GKRTKRQRPQ SPIPFEVAAS SPTTATSSAE 60 LFSSTTEEEE DMANCLILLA QGHEYRKPKR PAVEMEDHNY RRKNNCNNNY YDEPVASPKF 120 TSRRYLETAT STGTRAGYYV YQCKTCNRTF PSFQALGGHR ASHKKPKNSL NNNNHRHGSN 180 NFESLALPSP SSTEKRQMLT LLPSSSDDEG QYRKFSSLSL QLGSHNVGSS SFFGNSNNLK 240 NGNSSNSKVH ECSICGAEFT SGQALGGHMR RHRATPIGVS NLNAVPSSAG TMTTLSLTPL 300 ATYEDLEEPP PSTPVPIDQA KVNNLSLELD LNLPASAQEH HFDHHRHRAD HQESCGLSKF 360 PPLMNPPPPP PSSSSPHQQI EQKSQSSNKS SVVFSASPAL VDCHY

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MVGYRLSCLA VSCEVSDCRE MEEHAGPIVK GKRTKRQRPQ SPIPFEVAAS SPTTATSSAE  60
LFSSTTEEEE DMANCLILLA QGHEYRKPKR PAVEMEDHNY RRKNNCNNNY YDEPVASPKF  120
TSRRYLETAT STGTRAGYYV YQCKTCNRTF PSFQALGGHR ASHKKPKNSL NNNNHRHGSN  180
NFESLALPSP SSTEKRQMLT LLPSSSDDEG QYRKFSSLSL QLGSHNVGSS SFFGNSNNLK  240
NGNSSNSKVH ECSICGAEFT SGQALGGHMR RHRATPIGVS NLNAVPSSAG TMTTLSLTPL  300
ATYEDLEEPP PSTPVPIDQA KVNNLSLELD LNLPASAQEH HFDHHRHRAD HQESCGLSKF  360
PPLMNPPPPP PSSSSPHQQI EQKSQSSNKS SVVFSASPAL VDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-44	C2H2 family protein