PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM67214.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 426aa MW: 47384.1 Da PI: 5.8926

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM67214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	349	371	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ OWM67214.1 349 FMCRKCGKAFAVRGDWRTHEKNC 371 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MGDPYPSNCF PSGSWFKFIN PTPPLLQPHH QYFSSSSSPS STNPITIPSN PNFHFYPSSS 60 YPFEPTPPPP SPSPPIREAL PLLSLSPIRS STHHRYHHHQ GPDNDAPPVD EEEDDDEEED 120 HQLEAPRSTP MDLDLNKKIN SNSKRNKSKG SSSLKEDHRE QQDQLDHQED EEDEDEDDDE 180 AGAVTVALHI GLPSHSLAEI ATTAAATTTA ADAALSNSSG AGVVASSDHH RGDSKDDLAG 240 DYLNSGDEYQ CGILMNRINK GQYWIPTPSQ ILIGPTQFSC PMHMWGHGSQ YRKGPESLRG 300 TQPTGMLRLP CYCCAPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV 360 RGDWRTHEKN CGKLWYCICG SDFKHKRSLK DHIKAFGSGH AAYGVDSFEE DDEPASEVEQ 420 DNESMQ

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MGDPYPSNCF PSGSWFKFIN PTPPLLQPHH QYFSSSSSPS STNPITIPSN PNFHFYPSSS  60
YPFEPTPPPP SPSPPIREAL PLLSLSPIRS STHHRYHHHQ GPDNDAPPVD EEEDDDEEED  120
HQLEAPRSTP MDLDLNKKIN SNSKRNKSKG SSSLKEDHRE QQDQLDHQED EEDEDEDDDE  180
AGAVTVALHI GLPSHSLAEI ATTAAATTTA ADAALSNSSG AGVVASSDHH RGDSKDDLAG  240
DYLNSGDEYQ CGILMNRINK GQYWIPTPSQ ILIGPTQFSC PMHMWGHGSQ YRKGPESLRG  300
TQPTGMLRLP CYCCAPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV  360
RGDWRTHEKN CGKLWYCICG SDFKHKRSLK DHIKAFGSGH AAYGVDSFEE DDEPASEVEQ  420
DNESMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-118	C2H2 family protein