PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM66259.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25872.1 Da PI: 8.0339 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.8 | 1.6e-19 | 17 | 63 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ie++ r +tfskRr gi KKA ELS+LC+a++ +++fs+tgk + OWM66259.1 17 KKIEDENIRLITFSKRRSGIYKKACELSTLCGAQIGIVVFSPTGKPF 63 689*****************************************965 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MDLDGRKTRG KQKIQIKKIE DENIRLITFS KRRSGIYKKA CELSTLCGAQ IGIVVFSPTG 60 KPFSFGQPTI MAVLERYCNR NISKQPLDGD RVQQILEAQR RERIQELNQT LDETLTRLMD 120 EKKRGKSLAQ LIKETRAGKA ARGEVSWWEA KIEELSPPQL EQVSESLEQF YGDLTNHMNQ 180 RNNDNQNNNN NSNIVGSSIS SWETLNFDFN IADFDIGSGG FPDNWW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-34 | M-type_MADS family protein |