PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM66257.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22106.5 Da PI: 4.4872 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.3 | 6.3e-11 | 2 | 34 | 16 | 48 |
HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgklye 48 Rr++i K A+EL +LC ae+ ++ifs+tgk + OWM66257.1 2 RRATIYKQASELATLCCAEIGIVIFSPTGKPFS 34 9****************************9665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MRRATIYKQA SELATLCCAE IGIVIFSPTG KPFSFGTPSI EVVVERYLKR NLLGKSLDNG 60 DMQTILEADQ TTRIRELREA LNETLSQLEA KRMHGKSLQQ LIKASRAANA TRGEVNWWDA 120 KIRALSTPQL EQASASMEQF YGDLMNHMKQ GNNNNDQNNN NSDNGDVATS TDSLLEAENF 180 DDEVSDFEAG NEASPDEKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-26 | M-type_MADS family protein |