PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM66254.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 22355.8 Da PI: 10.3297 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.9 | 8.4e-16 | 20 | 65 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k+ie++ r + fs Rr+ i KKA+EL +LC+ae+ +++fs+tgk OWM66254.1 20 KKIEDDQHRFIMFSSRRAMIYKKASELATLCGAEIGIVVFSPTGKP 65 68******************************************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence |
MELAEPNGRK YWGRQKIKIK KIEDDQHRFI MFSSRRAMIY KKASELATLC GAEIGIVVFS 60 PTGKPFSFGI PTIDAVVERF LNRNTSEQPP DDGGMEQMLE AQQRTRIEKI RQNLNKTLAK 120 LEAEKKRDKS LKQLIKTARE PNAPRCEVGW WDAKIEALNP AQLEQVSTSI EQFYGDLMKH 180 MKKRQQLQPQ PQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-33 | M-type_MADS family protein |