PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63816.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91470.2 Da    PI: 6.175
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181876357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OWM63816.1 18 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 76
                6789*****************************************************97 PP
2START172.92.1e-541653722204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++++++ka+ ++  Wv++  +++g++++ +++ s+++sg a+r++g+v  +++  v+e+l+d++ W ++++  +++ vi +g  g+++l ++++
  OWM63816.1 165 IAEETLAQFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARVCGLVSLEPT-KVAEILKDRPSWFRDCRCLDVVSVIPTGngGTIELVYMQT 262
                 68999*****************************************************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l++ Rdf+++Ry+ +l++g++vi+++S++s+   p+   ss+++Rae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s+ + ++
  OWM63816.1 263 YAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSTIGGPSappSSGFARAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQ 361
                 ***********************************987777777******************************************************* PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++va l++ +
  OWM63816.1 362 KMTVAGLRHIR 372
                 ******99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    
MAAALNSKHQ QQQMDNNKYV RYTPEQVEAL ERVYNECPKP SSLRRQQLIR ECPILCNIEP  60
KQIKVWFQNR RCREKQRKES FRLQTVNRKL SAMNKLLMEE NDRLQKQVSH LVYENGYMRQ  120
QLQSSSATTT DNSCESVVMS GQQQQNPAAQ QPPKDASSPA GLLAIAEETL AQFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGVA ARVCGLVSLE PTKVAEILKD RPSWFRDCRC  240
LDVVSVIPTG NGGTIELVYM QTYAPTTLAA ARDFWTLRYT TSLEDGSLVI CERSLTSTIG  300
GPSAPPSSGF ARAEMLPSGY LIRPCEGGGS IIHIVDHVDL DAWSVPEVLR PLYESSKILA  360
QKMTVAGLRH IRQIAQESSG EVQFGGGRQP AVLRTFSQRL CRGFNDAVNG FVDDGWSLLG  420
SDGVEDVTIM VNSSPNKYFG SQYNAAMFPN IGRGVLCAKA SMLLQNVPPA LLVRFLREHR  480
SEWADYGIDA YSAACLKASP YGVPCPRAGG FPSSHVILPL AHTVEHEEFL EVVRLEGHAF  540
SPEDMALARD MYLLQLGNGL DENAVGSCAQ LVFAPIDESF ADDAPLLPSG FRDGPAATRT  600
LDLASTLEVG SGGARSTSDA DSTYNLRSVL TIAFQFTFEN HLRESVAAMA RQYVRSVVGS  660
VQRVAMAIAP TGLGPQLGPK SIPGSPEALT LARWICRSYR VYTGGELLQG DSQTGDAVLK  720
QLWHHSDAIL CCSVKNNASP VFTFANQAGL DMLETTLVAL QDIMLEKILD ESGRKALFSE  780
FAKIMQQGFA YLPAGICVSS MGRPLSYEQA VAWKVLDDDD LNHCLTFMFV NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein