PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO98090
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family SRS
Protein Properties Length: 385aa    MW: 42876.2 Da    PI: 8.2132
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO98090genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70223.51.6e-075898544
    DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv.kstWv 44
              + +C  CGn a+  C +  C+ CC     +C  hv ks   
  OMO98090 58 KPKCIVCGNVARSRCPFFSCKSCCSKAQNECRIHVlKSDSA 98
              5689******************************9455332 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MAASSPAATK STTDTTTATA TAMAAKTVTA AAAAAATPTP PPHFQRDTPP KTQRGLNKPK  60
CIVCGNVARS RCPFFSCKSC CSKAQNECRI HVLKSDSAFP EKKPTASTPS SDQKSTQSSS  120
QAAPLRLPSF RQLSNAFAQF DNLNVRSKKH LTKKDAVALN EWRFSKLKEF KDRSIEVENE  180
AFDWYMQNIS LLEEVFSTKS MHEESTEDEE SMPNPTSEKD ETSMMASGLK LTLRSHPVRT  240
DNSRKRIKQI VDQGIEKLQR SDTDEAASDP DSQNKLDSRL NKVKSLWVER SSILSNILDK  300
LNKARNEDDL KSCLEMKARV YNQTATHMEI KDPEALNKQS AENDVTPRKV ADFPVTKLFT  360
PTQVDQEALN KVDAHFSSLE QIEDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.12e-73SRS family protein