PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO88384

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 647aa MW: 71584.5 Da PI: 10.1915

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO88384	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.7e-08	11	42	3	35
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgR 35 +W t E++ll+ av+++G+++W++Ia +++ +R OMO88384 11 PWGTLEELLLASAVNRHGTKSWDSIALELQ-TR 42 7****************************9.66 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MAGEHETSAH PWGTLEELLL ASAVNRHGTK SWDSIALELQ TRRNSVSSSS SSSFTPQLCK 60 DKFFDLKRRF ISPNEAASSS GLVDQLRRIR VEELRREVQQ RDVSILSLEL KVKRLVEERE 120 RTLKEEPDLD GRQNKLSPEI DGCEPTAGND SGDPDDRSFN ESNSTSQKPE EATPTTTVTV 180 KDEKNDVEAV EKVGGGGGEK KAQVKTEPGV GSEPDPVRTG KGPGNEGVNG EEGDNKKQTS 240 DVQSSASLWM KKPRGVNSDG GSSSGEEREV SPAKKGGSGP AVKPEFFVKL LGIILSHRLG 300 SAFRRRQRSQ ESERYKNLIR QHIDLERIES RLEKGVYSSD GDGSPKFFRD LLLLFNNVMV 360 FHRKNSPEHI AAQELRGLVS KEMRDYKQLR KQATAWKPEP EELPPVCVSK PNKSSTMSIA 420 ACSKRGSIKE VTENNATRKR KVVEDDKPKP KPKPKADSNS NSNSNYFAGT GIDEIEKGIR 480 KKRSNERAVS ARRNSTRTSG KMMNEETKHE YGGNELSSHD TLELKVDKKE KPVPRKKQGA 540 ASFLKRMKQN SPSQVTTDKD DDDDDDDDDH SEEEKGRGKK RDVKRVTRSS GGRGAREEGG 600 RVKRGVGRPP KRAAAAAPET KGKRGRDNGD NEVGVGGGGR ARKRSRR

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MAGEHETSAH PWGTLEELLL ASAVNRHGTK SWDSIALELQ TRRNSVSSSS SSSFTPQLCK  60
DKFFDLKRRF ISPNEAASSS GLVDQLRRIR VEELRREVQQ RDVSILSLEL KVKRLVEERE  120
RTLKEEPDLD GRQNKLSPEI DGCEPTAGND SGDPDDRSFN ESNSTSQKPE EATPTTTVTV  180
KDEKNDVEAV EKVGGGGGEK KAQVKTEPGV GSEPDPVRTG KGPGNEGVNG EEGDNKKQTS  240
DVQSSASLWM KKPRGVNSDG GSSSGEEREV SPAKKGGSGP AVKPEFFVKL LGIILSHRLG  300
SAFRRRQRSQ ESERYKNLIR QHIDLERIES RLEKGVYSSD GDGSPKFFRD LLLLFNNVMV  360
FHRKNSPEHI AAQELRGLVS KEMRDYKQLR KQATAWKPEP EELPPVCVSK PNKSSTMSIA  420
ACSKRGSIKE VTENNATRKR KVVEDDKPKP KPKPKADSNS NSNSNYFAGT GIDEIEKGIR  480
KKRSNERAVS ARRNSTRTSG KMMNEETKHE YGGNELSSHD TLELKVDKKE KPVPRKKQGA  540
ASFLKRMKQN SPSQVTTDKD DDDDDDDDDH SEEEKGRGKK RDVKRVTRSS GGRGAREEGG  600
RVKRGVGRPP KRAAAAAPET KGKRGRDNGD NEVGVGGGGR ARKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	3e-36	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMO88384