PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84157

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 139aa MW: 16355.4 Da PI: 9.6579

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84157	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.9	1e-33	60	118	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s+fprsYYrCt+++C+vkk+v+rs++d ++v++tYeg H+h+ OMO84157 60 LDDGYRWRKYGQKTVKNSKFPRSYYRCTHKECNVKKQVQRSSKDDEIVVTTYEGIHTHP 118 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence
MANHQSYLQG GDLFDTRKVG DKCENLDAKE GSESEVMKVG KKGTRKHKYA FQTRSQVDIL 60 DDGYRWRKYG QKTVKNSKFP RSYYRCTHKE CNVKKQVQRS SKDDEIVVTT YEGIHTHPVE 120 KFTENFEHIL RQMQSYNPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-52	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO84157