PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO79809

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Nin-like

Protein Properties

Length: 919aa MW: 100786 Da PI: 5.4944

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO79809	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.5e-29	521	571	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ OMO79809 521 EKSISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 571 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence
MCEPEEDNAC PFPPKQQQQQ QPQQQQTQGA PNPGNENPKE ENDNRVLPSP FLGLLPLDNP 60 DSYCVIKERM TQALRYFKES TEQHVLAQVW APVKTGGRYV LTTSGQPFVL DPHSSGLNQY 120 RMVSLMYMFS VDGESNGQLG LPGRVFRQKL PEWTPNVQYY SSREYSRLDH ALHYNVQGTL 180 ALPVFEPSGQ LCVGVLELIM TSQKINYAPE VDKVCKALEA VNLKSSDILD HPSNQICNES 240 RQNALAEILE ILTVVCETHK IPLAQTWVPC RHRSVLAYGG GLKKSCTSFD GSCMGQVCMS 300 TTDVAFYVVD AHMWGFREAC LEHHLQKGQG VAGRAFLSQN SCFCADITRF CKTDYPLVHY 360 ARMFGLTGCF AICLRSSYTG DDDYVLEFFL PPAITDSKEQ QTLLGAILAT MKQHFHSLKV 420 SSGVELEEDE GSIEIIEASS DERLDSRLES IPIPPSVKSP PGPNTSPNRE LQLDSSKQQV 480 NVNIEPATDG GNAVASGSKT PVCLPQKKDV KKSERKRGKT EKSISLDVLQ QYFAGSLKDA 540 AKSLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLTKLKR VIESVQGADG GYGLTSISTS 600 PLPVAVGSIS WPASLNGSNQ QNSPNSKPSE PQGEKTDSLT CTIPGNNGQA LVEDHLLGGR 660 TLSQEELLPQ QNRLSPEANR CKTGSVSREE SAGTPTSHGS CQGSPAIESA ATKDPLGTIH 720 EQCFKQRSSP ELPLGQLNIS ATFSMPEALV AVEPQEPFGG MLVEDAGSSK DLRNLCPAAD 780 LGADERFPES SWTPPPCDLA LKQTMGTFTQ ITPVVTTRQE MRSVTIKATY REDIIRFRIS 840 LSSGIDELKE EVAKRLKLEV GTFDIKYLDD DNEWVLIACD ADLQECLEVS RSSGSNIIRL 900 SVHDTMANLG SSCESTGEL

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence

MCEPEEDNAC PFPPKQQQQQ QPQQQQTQGA PNPGNENPKE ENDNRVLPSP FLGLLPLDNP  60
DSYCVIKERM TQALRYFKES TEQHVLAQVW APVKTGGRYV LTTSGQPFVL DPHSSGLNQY  120
RMVSLMYMFS VDGESNGQLG LPGRVFRQKL PEWTPNVQYY SSREYSRLDH ALHYNVQGTL  180
ALPVFEPSGQ LCVGVLELIM TSQKINYAPE VDKVCKALEA VNLKSSDILD HPSNQICNES  240
RQNALAEILE ILTVVCETHK IPLAQTWVPC RHRSVLAYGG GLKKSCTSFD GSCMGQVCMS  300
TTDVAFYVVD AHMWGFREAC LEHHLQKGQG VAGRAFLSQN SCFCADITRF CKTDYPLVHY  360
ARMFGLTGCF AICLRSSYTG DDDYVLEFFL PPAITDSKEQ QTLLGAILAT MKQHFHSLKV  420
SSGVELEEDE GSIEIIEASS DERLDSRLES IPIPPSVKSP PGPNTSPNRE LQLDSSKQQV  480
NVNIEPATDG GNAVASGSKT PVCLPQKKDV KKSERKRGKT EKSISLDVLQ QYFAGSLKDA  540
AKSLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLTKLKR VIESVQGADG GYGLTSISTS  600
PLPVAVGSIS WPASLNGSNQ QNSPNSKPSE PQGEKTDSLT CTIPGNNGQA LVEDHLLGGR  660
TLSQEELLPQ QNRLSPEANR CKTGSVSREE SAGTPTSHGS CQGSPAIESA ATKDPLGTIH  720
EQCFKQRSSP ELPLGQLNIS ATFSMPEALV AVEPQEPFGG MLVEDAGSSK DLRNLCPAAD  780
LGADERFPES SWTPPPCDLA LKQTMGTFTQ ITPVVTTRQE MRSVTIKATY REDIIRFRIS  840
LSSGIDELKE EVAKRLKLEV GTFDIKYLDD DNEWVLIACD ADLQECLEVS RSSGSNIIRL  900
SVHDTMANLG SSCESTGEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OMO79809