PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68527

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 387aa MW: 43749.3 Da PI: 6.5489

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68527	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.2e-05	226	245	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OMO68527 226 FSCPLCFKTFNRYNNMQMHM 245 89*****************9 PP
2	zf-C2H2	15.4	5.5e-05	310	332	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ OMO68527 310 FMCRKCGKTFAVRGDWRTHEKNC 332 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MSDSDPYSNY FNGWYNNLNS NFNPFFPSTS SSNPAPYNGF NHHFYSSNTI DGNYCSFSTQ 60 FYNYNNTNNY QEYQPPSPPL KEALPLLSLS PTRHHHEEEQ EEINFSSSCC NNNCTAMEVE 120 KSSKVFDNSN KEESSSCCFD EDVTVALHLG LPSPSTNISS AADLMNISSR VSADSSSVAV 180 NVEAEKDQDV ITVANSSSEL IQSNTLNKGQ YWIPTPAQIL IGPTQFSCPL CFKTFNRYNN 240 MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAPGCR NNIDHPRSKP LKDFRTLQTH 300 YKRKHGIKPF MCRKCGKTFA VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG 360 HAAYGIDSFD EEDEPASEIE QDNESSQ

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MSDSDPYSNY FNGWYNNLNS NFNPFFPSTS SSNPAPYNGF NHHFYSSNTI DGNYCSFSTQ  60
FYNYNNTNNY QEYQPPSPPL KEALPLLSLS PTRHHHEEEQ EEINFSSSCC NNNCTAMEVE  120
KSSKVFDNSN KEESSSCCFD EDVTVALHLG LPSPSTNISS AADLMNISSR VSADSSSVAV  180
NVEAEKDQDV ITVANSSSEL IQSNTLNKGQ YWIPTPAQIL IGPTQFSCPL CFKTFNRYNN  240
MQMHMWGHGS QYRKGPESLR GTQPTAMLRL PCYCCAPGCR NNIDHPRSKP LKDFRTLQTH  300
YKRKHGIKPF MCRKCGKTFA VRGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIKAFGNG  360
HAAYGIDSFD EEDEPASEIE QDNESSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-135	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO68527