PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66554

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 597aa MW: 63971.3 Da PI: 6.1602

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66554	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	314	372	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ OMO66554 314 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 372 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MDSSAAAAKR SPPPTTIQFP VSVNLNSSSS SQDDEQFHHK RTVTGEMDFF AAKNNINDNK 60 LGDHHDDEDG GGDDDDADAD IKLHSSIDRT TALELNVNTG LNLLTTNTSS DQSTVDDGIS 120 SNNMDDKRAK NELAVLQAEL ERMNAENQRL REMLSQVTSN YNAVQMHLVS LMQQQRDAKA 180 EKAEEHDQIM EGKLEQKKPN GGVIVPRQFM NLGLAGSGAA DTDEPSLSSS EGRSHDRSGS 240 PNNNAEVGSK EFRLRKRGNS EEEGRGSGGR EDSPDQGYKV PRFNSPKNVD QADQATMRKA 300 RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTI 360 LITTYEGNHN HPLPPAAMAM ASTTSSAARM LLSGSMSSAD GLMNSNFLTR TLLPCSSSMA 420 TISASAPFPT VTLDLTQTPN PLQLPRPPPG QFQVPFPNQP HNNLANASPA SLLPQIFGQA 480 LYNQSKFSGL QMSQDLDQPS HHQLGGQQLQ QGQQNSLADT VTAATAAIAA DPNFTAALAA 540 AITSIIGSSQ SHPTNVPNNN ATNLTSATNS SGNAAATTSN SNSNGNNKIS NSSFAAN

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MDSSAAAAKR SPPPTTIQFP VSVNLNSSSS SQDDEQFHHK RTVTGEMDFF AAKNNINDNK  60
LGDHHDDEDG GGDDDDADAD IKLHSSIDRT TALELNVNTG LNLLTTNTSS DQSTVDDGIS  120
SNNMDDKRAK NELAVLQAEL ERMNAENQRL REMLSQVTSN YNAVQMHLVS LMQQQRDAKA  180
EKAEEHDQIM EGKLEQKKPN GGVIVPRQFM NLGLAGSGAA DTDEPSLSSS EGRSHDRSGS  240
PNNNAEVGSK EFRLRKRGNS EEEGRGSGGR EDSPDQGYKV PRFNSPKNVD QADQATMRKA  300
RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTI  360
LITTYEGNHN HPLPPAAMAM ASTTSSAARM LLSGSMSSAD GLMNSNFLTR TLLPCSSSMA  420
TISASAPFPT VTLDLTQTPN PLQLPRPPPG QFQVPFPNQP HNNLANASPA SLLPQIFGQA  480
LYNQSKFSGL QMSQDLDQPS HHQLGGQQLQ QGQQNSLADT VTAATAAIAA DPNFTAALAA  540
AITSIIGSSQ SHPTNVPNNN ATNLTSATNS SGNAAATTSN SNSNGNNKIS NSSFAAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-108	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO66554