PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65776
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 309aa    MW: 34307.3 Da    PI: 8.2539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65776genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.7e-2183131255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr ++ +grW+AeIrd      r +r++lg+f+taeeAa+a+++a+++l+g
  OMO65776  83 RYRGVRLRP-WGRWAAEIRDG-----RgTRYWLGTFDTAEEAAAAYDQAALQLRG 131
               8********.**********4.....44*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MAKTQKISSP PPPKKPKQSF SRRIVRITVT DADATDSSSD DEVISTKENH KQPKKKLVNE  60
ITIGMSKEES VKTPRPSQGK AKRYRGVRLR PWGRWAAEIR DGRGTRYWLG TFDTAEEAAA  120
AYDQAALQLR GPDAPTNFKL LNCNAVQSSK LFKQNSLNIM EQFTRIVMRL SSDPGGKYYT  180
TYTCSPPVSS QTKATLTLNS FEAGGDGGGP SECDNQYHSD DDPVVALSTG WFNHKKRCFQ  240
YINIYGNGKS VRAKVVDECD STMGCDSDHD YQPPCDNNIV DASKAVWKAL GVPQDQWGGM  300
DIYWADADD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11118PPPKKPKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-15ERF family protein