PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60261
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 459aa    MW: 49646.8 Da    PI: 7.4132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60261genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-1766115255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  OMO60261  66 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 115
               59*******.**********93....35999**********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MEEAFRRLNG IRHVPDHDSL TENLKKSAAA ATAVTAMTTT TATTATTTTG ATTNKRSLKE  60
NGGTMRYRGV RRRPWGRYAA EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGIKART  120
NFIYPTTTTT EPLHSAANDS FLPPFNFSKQ SQTSLRDLNG SRSQLGFSSN WTTSFGNSHG  180
GDFSAGGGGG SATQRNNASL NMLLLRDLLN SSSNSSLGHS SHHSFVDQFP FINGTSTSVS  240
SSSSSSLSST FTTPSINLPT NTNTCFNIGS TMTLPLKENN SNHHSSANVV PAVAISNNSQ  300
ADDQDMEFFP QEPSDSGLLH EIIQGFLPKP TSKKRLSNFS QDSMQVPPPP PPTDQMAAFT  360
TQSQLGGLKK EIKSENLGFS INYNGVVPHP HHQQFESCYN FNGITTNSQV LPYVNDQMGA  420
VGVGNHVQLG QDNCMLDDIC FQYPDFMGAA LAAARVQNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-13ERF family protein