PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT36041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21020.1 Da PI: 10.2948 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60 | 2.9e-19 | 16 | 56 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien+ nrqvtfskRrng++KKA+EL v+ +aev +i+ + OIT36041 16 KIENQNNRQVTFSKRRNGVFKKANELAVMSGAEVGIIVCPQ 56 79***********************************9755 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MSTRLIKGRK NIHLAKIENQ NNRQVTFSKR RNGVFKKANE LAVMSGAEVG IIVCPQGSKP 60 YSFGHPNVND TINKYIGEER SPSPSSPGID DKYVLMFRKA NSKELNTGLN SLQDQLDFAL 120 KLKSKLKQMN KNVKSQQEWF KGPIEKMNYT EASMLKEGLE DLLLKVKNYG TERGYGYENG 180 KWKAE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-29 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT36041 |