PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34625

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 323aa MW: 36644.2 Da PI: 8.1693

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34625	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	159	178	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ OIT34625 159 FSCHLCYKTFNRYNNLQMHM 178 89*****************9 PP
2	zf-C2H2	15.8	4.1e-05	243	265	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ OIT34625 243 FMCRKCGKPFAVKGDWRTHEKNC 265 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MTEPYYNFFT GWFNFLPIHQ QYLSSPNFCY NNSNNNNFQE EVSLAPPPSP PLKEALPLLK 60 NVDKLDKTNT TKYSYESTTS SAAEEDNSNE NVSVSLHIGL PISPSSDLTS SRVSFSSEGQ 120 VIDENVGGNK EFDVPLSRLN KGQYWIPTPS QILIGPTQFS CHLCYKTFNR YNNLQMHMWG 180 HGSQYRKGPE SLRGTQPSAM LRLPCYCCAP DCKHNIDHPR ARPLKDFRTL QTHYKRKHGV 240 KPFMCRKCGK PFAVKGDWRT HEKNCGKIWY CICGSDFKHK RSLKDHIKSF GRGHGAVGIP 300 NLEELEDEST SEIEHDVGSS SPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT34625