PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT32353

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 363aa MW: 40640.9 Da PI: 6.9446

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT32353	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H OIT32353 154 YECKTCNRTFPSFQALGGHRASH 176 99**********99999998887 PP
2	zf-C2H2	14.2	0.00013	241	263	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H OIT32353 241 HTCSYCGAEFNSGQALGGHMRRH 263 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
METPQEEVVG VSKDLSHIVK GKRTKRLRPQ SPIPFTIAAH SSTDDDGGDG REITIINNNN 60 NNDNNISQPL ATSAENFPDE DVPTEEEEET AKCLILLSQG GHPSSRQRFI ESPPSKLFNL 120 FNDDMGLYQS KFNSKRYVET TNIGNGAKAG TYVYECKTCN RTFPSFQALG GHRASHKKPK 180 PLTIEPKKTF FHFSDQDEPS PPTNYKHNNN INKLSPLSPL STQFSNFNME SPNNKSSPRI 240 HTCSYCGAEF NSGQALGGHM RRHRGGANTS LCLSPLNTQA ISFEESPNNL KKPRNVGLSL 300 DLNLPAPEDQ NHQSRNFQYP PKYPVAIEQQ QDQEQTQKQQ QQQQQEQTAL VLSTTPQLID 360 CHY

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

METPQEEVVG VSKDLSHIVK GKRTKRLRPQ SPIPFTIAAH SSTDDDGGDG REITIINNNN  60
NNDNNISQPL ATSAENFPDE DVPTEEEEET AKCLILLSQG GHPSSRQRFI ESPPSKLFNL  120
FNDDMGLYQS KFNSKRYVET TNIGNGAKAG TYVYECKTCN RTFPSFQALG GHRASHKKPK  180
PLTIEPKKTF FHFSDQDEPS PPTNYKHNNN INKLSPLSPL STQFSNFNME SPNNKSSPRI  240
HTCSYCGAEF NSGQALGGHM RRHRGGANTS LCLSPLNTQA ISFEESPNNL KKPRNVGLSL  300
DLNLPAPEDQ NHQSRNFQYP PKYPVAIEQQ QDQEQTQKQQ QQQQQEQTAL VLSTTPQLID  360
CHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	9e-54	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT32353