PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30693
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92524.6 Da    PI: 6.217
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30693genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-181674357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  OIT30693 16 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
              6789*****************************************************97 PP
2START171.17.2e-541643712204
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +g  g+++l++ +++a
  OIT30693 164 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNILSVIPTGngGTIELIYLQTYA 263
               68999*****************************************************.8888888888******************************** PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l++s+ + ++kt+v
  OIT30693 264 PTTLASaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVLRPLYESSKILAQKTTV 364
               **********************************999998999********************************************************** PP

               HHTXXXX CS
     START 198 atlqrqc 204
               a+l++ +
  OIT30693 365 AALRHIR 371
               ***9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MALCLHNKNQ IMDNSKYVRY TPEQVEALER VYAECPKPTS LRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LTTVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYMKQQI  120
NTVSSTTTDT SCESVVVNGQ QQRKNPTPQH PERDANNPAG LLAIAEETLA EFLGKATGTA  180
VDWVQMIGMK PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR PSWYRDCRCL  240
NILSVIPTGN GGTIELIYLQ TYAPTTLASA RDFWTLRYTT SLEDGSLVIC ERSLTTATGG  300
PTGPPATSFV RAEMLPSGYL IRPCEGGGSM IHIVDHIDLD AWSVPEVLRP LYESSKILAQ  360
KTTVAALRHI RQIAQETSGE IQYTGGRQPA VLRALSQRLC RGFNDAVNGF VDDGWTVMDS  420
DGVEDVTIAI NSSSTKFLGS QYNTLSILPT FGGVLCARAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDAY SAASLKSSPY AVPCARPGGF PSSQVILPLA QTVEHEEFLE VVRLEGPAFS  540
PEDIALSRDM YLLQLCSGVD ENASGACAQL VFAPIDESFG DDAPLLPSGF RVIPLEPKSD  600
GPAATRTLDL ASTLEAGTGG TRPAGEIEAS NYNHRSVLTI AFQFIFESHY RDNVAAMARQ  660
YVRSIVGSVQ RVAMAIAPSR LSSQLTPKPF PGSPEAVTLA RWISRSYRVH TGGDLLQVDS  720
QAGDAVLKQL WHHSDAIMCC SVKMNASAVF TFANQAGLDM LETTLLALQD IMLDKILDEA  780
GRKVLLSEFS KIMQQGFAYL PAGICVSSMG RPVSYEQAVA WKVLNDEDSN HCLAFMFINW  840
SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein